Vcorn
SARS-CoV-2
Database of viral gene mutation
★ T723T
♦
Profile
Specimens
cDNA
3-letter
amino acid
1-letter
amino acid
The earliest specimen
Specimen ID
Collectin date
Geographical location
10,170
c.2169C>T
Thr723Thr
T723T
FR996805.1
2020-03-04
United Kingdom
FR996805.1
2020-03-04
United Kingdom
♦
WHO labeled variants
WHO label
Designation
Pango lineage
Specimen Share
Alpha
VOC
B.1.1.7
0 % ( 41 / 542530 )
Beta
VOC
B.1.351
0 % ( 1 / 7535 )
Gamma
VOC
P.1
0 % ( 3 / 26941 )
Delta
VOC
B.1.617.2
0 % ( 149 / 2560363 )
Epsilon
Unmonitored
B.1.427
0 % ( 1 / 41381 )
Zeta
Unmonitored
P.2
0 % ( 0 / 1291 )
Eta
Unmonitored
B.1.525
0 % ( 0 / 2466 )
Theta
Unmonitored
P.3
0 % ( 0 / 43 )
Iota
Unmonitored
B.1.526
7 % ( 2422 / 33075 )
Kappa
Unmonitored
B.1.617.1
0 % ( 0 / 554 )
Lambda
VOI
C.37
96 % ( 1268 / 1315 )
Mu
VOI
B.1.621
0 % ( 0 / 5500 )
Omicron
VOC
B.1.1.529
0 % ( 130 / 2333319 )
♦
Network between major mutations
D614G:5948563
T478K:3693517
P681H:2893569
G142D:2819456
L452R:2670051
P681R:2563035
T19R:2527655
D950N:2480832
E156fs:2396369
H655Y:2354889
N969K:2327356
T95I:2323542
Q954H:2316229
N679K:2316028
D796Y:2310375
D1146D:2285693
N764K:2138247
I68fs:1892405
N501Y:1755762
L981F:1251457
N856K:1246232
S477N:1219478
G339D:1218185
Y505H:1179592
E484A:1179233
G142fs:1177428
Q498R:1177162
S375F:1167506
S373P:1167354
N211fs:1166427
K417N:1123423
N440K:1096335
T19I:1069955
V213G:1064283
Q493R:1060854
D215fs:1051876
L24fs:1038801
R408S:1033237
A67V:1033211
T376A:1029269
D405N:1028502
S371F:1027310
V143fs:552113
A570D:544169
D1118H:543063
T716I:541773
S982A:537172
T547K:204408
A701V:150226
S704L:142578
G496S:141436
S371L:133639
L452Q:128246
G446S:127604
F486V:118985
L5F:115985
R346K:112161
L18F:80676
E484K:71650
S13I:40770
W152C:39420
D253G:37087
Q677H:35544
P26S:34458
V1176F:33647
K417T:33540
T1027I:32226
D138Y:32088
T20N:26519
R190S:25039
T76I:18184
T859N:13531
D215G:8640
T240fs:8158
H1101Y:8088
W152R:7846
D80A:7813
E484Q:6985
G75V:6718
Y145N:4884
Y144S:4776
F490S:4308
F157L:3674
Q52R:2805
F888L:2593
G257S:1599
R246fs:1235
Q1071H:995
I210V:471
K147E:430
E1092K:141
N460K:112
G339H:84
T723T:10,170
D614G
(gray);
alpha
(purple);
beta
(cyan);
gamma
(green);
delta
(orange);
omicron
(red);
related to alpha
(lavender);
related to beta
(lightcyan);
related to delta
(moccasin);
others
(darkgray)
Black dot
: mutation of interest;
mutation in red or gray characters
: coexistent in ≥50% or <50% specimens
Link color
Black: 1 Maroon: ≥0.75 Red: ≥0.5 Orange: ≥0.25 Yellow: ≥0
♦
Monthly chart
2020
Jan.
Feb.
Mar.
Apr.
May
Jun.
Jul.
Aug.
Sep.
Oct.
Nov.
Dec.
2021
Jan.
Feb.
Mar.
Apr.
May
Jun.
Jul.
Aug.
Sep.
Oct.
Nov.
Dec.
2022
Jan.
Feb.
Mar.
Apr.
May
Jun.
Jul.
Aug.
Sep.
Oct.
Nov.
Dec.
0
10
20
30
40
50
60
70
80
90
100
Mutation ratio (%)
Jan 2020, 0 (0%)
Feb 2020, 0 (0%)
Mar 2020, 230 (1%)
Apr 2020, 564 (2%)
May 2020, 474 (4%)
Jun 2020, 588 (4%)
Jul 2020, 374 (2%)
Aug 2020, 424 (2%)
Sep 2020, 338 (1%)
Oct 2020, 330 (1%)
Nov 2020, 291 (0%)
Dec 2020, 230 (0%)
Jan 2021, 342 (0%)
Feb 2021, 362 (0%)
Mar 2021, 1012 (0%)
Apr 2021, 1758 (0%)
May 2021, 1418 (0%)
Jun 2021, 662 (0%)
Jul 2021, 318 (0%)
Aug 2021, 116 (0%)
Sep 2021, 31 (0%)
Oct 2021, 31 (0%)
Nov 2021, 23 (0%)
Dec 2021, 35 (0%)
Jan 2022, 24 (0%)
Feb 2022, 31 (0%)
Mar 2022, 16 (0%)
Apr 2022, 21 (0%)
May 2022, 24 (0%)
Jun 2022, 8 (0%)
Jul 2022, 2 (0%)
♦
Global map
/* * Ocean & lake */
/* * Each country/territory/region *//* * id="af", Afghanistan */
Afghanistan: 0 (0%)
/* * id="al", Albania */
Albania: 0 (0%)
/* * id="dz", Algeria */
Algeria: 0 (0%)
/* * id="as", American Samoa (US) */
American Samoa (US): 0 (0%)
/* * id="ad", Andorra */
Andorra: 0 (0%)
/* * id="ao", Angola */
Angola: 0 (0%)
/* * id="ai", Anguilla (UK) */
Anguilla (UK): 0 (0%)
/* * id="aq", Antarctica */
Antarctica: 0 (0%)
/* * id="ag", Antigua and Barbuda */
Antigua and Barbuda: 0 (0%)
/* * id="ar", Argentina */
Argentina: 2 (1%)
/* * id="am", Armenia */
Armenia: 0 (0%)
/* * id="aw", Aruba (Netherlands) */
Aruba (Netherlands): 0 (0%)
/* * id="au", Australia */
Australia: 26 (0%)
/* * id="at", Austria */
Austria: 0 (0%)
/* * id="az", Azerbaijan */
Azerbaijan: 0 (0%)
/* * id="bs", Bahamas */
Bahamas: 0 (0%)
/* * id="bh", Bahrain */
Bahrain: 12 (0%)
/* * id="bd", Bangladesh */
Bangladesh: 1 (0%)
/* * id="bb", Barbados */
Barbados: 0 (0%)
/* * id="by", Belarus */
Belarus: 0 (0%)
/* * id="be", Belgium */
Belgium: 0 (0%)
/* * id="bz", Belize */
Belize: 0 (0%)
/* * id="bj", Benin */
Benin: 0 (0%)
/* * id="bm", Bermuda (UK) */
Bermuda (UK): 0 (0%)
/* * id="bt", Bhutan */
Bhutan: 0 (0%)
/* * id="bo", Bolivia */
Bolivia: 0 (0%)
/* * id="ba", Bosnia and Herzegovina */
Bosnia and Herzegovina: 0 (0%)
/* * id="bw", Botswana */
Botswana: 0 (0%)
/* * id="br", Brazil */
Brazil: 1 (0%)
/* * id="bn", Brunei */
Brunei: 0 (0%)
/* * id="bg", Bulgaria */
Bulgaria: 0 (0%)
/* * id="bf", Burkina Faso */
Burkina Faso: 0 (0%)
/* * id="bi", Burundi */
Burundi: 0 (0%)
/* * id="cv", Cape Verde */
Cape Verde: 0 (0%)
/* * id="kh", Cambodia */
Cambodia: 0 (0%)
/* * id="cm", Cameroon */
Cameroon: 0 (0%)
/* * id="ca", Canada */
Canada: 0 (0%)
/* * id="ky", Cayman Islands (UK) */
Cayman Islands (UK): 0 (0%)
/* * id="cf", Central African Republic */
Central African Republic: 0 (0%)
/* * id="td", Chad */
Chad: 0 (0%)
/* * id="cl", Chile */
Chile: 17 (2%)
/* * id="cn", China */
China: 0 (0%)
/* * id="co", Colombia */
Colombia: 0 (0%)
/* * id="km", Comoros */
Comoros: 0 (0%)
/* * id="cg", Congo */
Congo: 0 (0%)
/* * id="cd", DR Congo */
DR Congo: 0 (0%)
/* * id="ck", Cook Islands (NZ) */
Cook Islands (NZ): 0 (0%)
/* * id="cr", Costa Rica */
Costa Rica: 0 (0%)
/* * id="ci", Ivory Coast */
Ivory Coast: 0 (0%)
/* * id="hr", Croatia */
Croatia: 0 (0%)
/* * id="cu", Cuba */
Cuba: 0 (0%)
/* * id="cy", Cyprus */
Cyprus: 0 (0%)
/* * id="cz", Czech Republic */
Czech Republic: 0 (0%)
/* * id="dk", Denmark */
Denmark: 49 (0%)
/* * id="dj", Djibouti */
Djibouti: 2 (0%)
/* * id="dm", Dominica */
Dominica: 0 (0%)
/* * id="do", Dominican Republic */
Dominican Republic: 3 (0%)
/* * id="ec", Ecuador */
Ecuador: 0 (0%)
/* * id="eg", Egypt */
Egypt: 382 (35%)
/* * id="sv", El Salvador */
El Salvador: 0 (0%)
/* * id="gq", Equatorial Guinea */
Equatorial Guinea: 0 (0%)
/* * id="er", Eritrea */
Eritrea: 0 (0%)
/* * id="ee", Estonia */
Estonia: 23 (1%)
/* * id="sz", Eswatini */
Eswatini: 0 (0%)
/* * id="et", Ethiopia */
Ethiopia: 0 (0%)
/* * id="fk", Falkland Islands (UK) */
Falkland Islands (UK): 0 (0%)
/* * id="fo", Faroe Islands (Denmark) */
Faroe Islands (Denmark): 0 (0%)
/* * id="fj", Fiji */
Fiji: 0 (0%)
/* * id="fi", Finland */
Finland: 0 (0%)
/* * id="fr", France */
France: 83 (0%)
/* * id="pf", French Polynesia (France) */
French Polynesia (France): 0 (0%)
/* * id="ga", Gabon */
Gabon: 0 (0%)
/* * id="gm", Gambia */
Gambia: 0 (0%)
/* * id="ge", Georgia */
Georgia: 0 (0%)
/* * id="de", Germany */
Germany: 916 (0%)
/* * id="gh", Ghana */
Ghana: 0 (0%)
/* * id="gi", Gibraltar (UK) */
Gibraltar (UK): 0 (0%)
/* * id="gr", Greece */
Greece: 1 (0%)
/* * id="gl", Greenland (Denmark) */
Greenland (Denmark): 0 (0%)
/* * id="gd", Grenada */
Grenada: 0 (0%)
/* * id="gu", Guam (US) */
Guam (US): 0 (0%)
/* * id="gt", Guatemala */
Guatemala: 0 (0%)
/* * id="gg", Guernsey (UK) */
Guernsey (UK): 0 (0%)
/* * id="gn", Guinea */
Guinea: 0 (0%)
/* * id="gw", Guinea-Bissau */
Guinea-Bissau: 0 (0%)
/* * id="gy", Guyana */
Guyana: 0 (0%)
/* * id="ht", Haiti */
Haiti: 0 (0%)
/* * id="va", Vatican City */
Vatican City: 0 (0%)
/* * id="hn", Honduras */
Honduras: 0 (0%)
/* * id="hu", Hungary */
Hungary: 0 (0%)
/* * id="is", Iceland */
Iceland: 43 (0%)
/* * id="in", India */
India: 1 (0%)
/* * id="id", Indonesia */
Indonesia: 0 (0%)
/* * id="ir", Iran */
Iran: 1 (0%)
/* * id="iq", Iraq */
Iraq: 0 (0%)
/* * id="ie", Ireland */
Ireland: 0 (0%)
/* * id="im", Isle of Man (UK) */
Isle of Man (UK): 0 (0%)
/* * id="il", Israel */
Israel: 1 (0%)
/* * id="it", Italy */
Italy: 14 (1%)
/* * id="jm", Jamaica */
Jamaica: 0 (0%)
/* * id="jp", Japan */
Japan: 1 (0%)
/* * id="je", Jersey (UK) */
Jersey (UK): 0 (0%)
/* * id="jo", Jordan */
Jordan: 0 (0%)
/* * id="kz", Kazakhstan */
Kazakhstan: 0 (0%)
/* * id="ke", Kenya */
Kenya: 11 (0%)
/* * id="ki", Kiribati */
Kiribati: 0 (0%)
/* * id="kp", North Korea */
North Korea: 0 (0%)
/* * id="kr", South Korea */
South Korea: 0 (0%)
/* * id="kw", Kuwait */
Kuwait: 0 (0%)
/* * id="kg", Kyrgyzstan */
Kyrgyzstan: 0 (0%)
/* * id="la", Laos */
Laos: 0 (0%)
/* * id="lv", Latvia */
Latvia: 0 (0%)
/* * id="lb", Lebanon */
Lebanon: 7 (0%)
/* * id="ls", Lesotho */
Lesotho: 0 (0%)
/* * id="lr", Liberia */
Liberia: 0 (0%)
/* * id="ly", Libya */
Libya: 0 (0%)
/* * id="li", Liechtenstein */
Liechtenstein: 1 (0%)
/* * id="lt", Lithuania */
Lithuania: 0 (0%)
/* * id="lu", Luxembourg */
Luxembourg: 0 (0%)
/* * id="mg", Madagascar */
Madagascar: 0 (0%)
/* * id="mw", Malawi */
Malawi: 0 (0%)
/* * id="my", Malaysia */
Malaysia: 0 (0%)
/* * id="mv", Maldives */
Maldives: 0 (0%)
/* * id="ml", Mali */
Mali: 0 (0%)
/* * id="mt", Malta */
Malta: 0 (0%)
/* * id="mh", Marshall Islands */
Marshall Islands: 0 (0%)
/* * id="mr", Mauritania */
Mauritania: 0 (0%)
/* * id="mu", Mauritius */
Mauritius: 0 (0%)
/* * id="yt", Mayotte */
Mayotte: 0 (0%)
/* * id="mx", Mexico */
Mexico: 5 (0%)
/* * id="fm", F.S. Micronesia */
F.S. Micronesia: 0 (0%)
/* * id="md", Moldova */
Moldova: 0 (0%)
/* * id="mc", Monaco */
Monaco: 0 (0%)
/* * id="mn", Mongolia */
Mongolia: 0 (0%)
/* * id="me", Montenegro */
Montenegro: 0 (0%)
/* * id="ms", Montserrat (UK) */
Montserrat (UK): 0 (0%)
/* * id="ma", Morocco */
Morocco: 0 (0%)
/* * id="mz", Mozambique */
Mozambique: 0 (0%)
/* * id="mm", Myanmar */
Myanmar: 0 (0%)
/* * id="na", Namibia */
Namibia: 0 (0%)
/* * id="nr", Nauru */
Nauru: 0 (0%)
/* * id="np", Nepal */
Nepal: 0 (0%)
/* * id="nl", Netherlands */
Netherlands: 16 (1%)
/* * id="nc", New Caledonia (France) */
New Caledonia (France): 0 (0%)
/* * id="nz", New Zealand */
New Zealand: 137 (2%)
/* * id="ni", Nicaragua */
Nicaragua: 0 (0%)
/* * id="ne", Niger */
Niger: 0 (0%)
/* * id="ng", Nigeria */
Nigeria: 0 (0%)
/* * id="nu", Niue (NZ) */
Niue (NZ): 0 (0%)
/* * id="mk", North Macedonia */
North Macedonia: 0 (0%)
/* * id="mp", Northern Mariana Islands (US) */
Northern Mariana Islands (US): 0 (0%)
/* * id="no", Norway */
Norway: 0 (0%)
/* * id="om", Oman */
Oman: 0 (0%)
/* * id="pk", Pakistan */
Pakistan: 25 (2%)
/* * id="pw", Palau */
Palau: 0 (0%)
/* * id="ps", Palestine */
Palestine: 0 (0%)
/* * id="pa", Panama */
Panama: 0 (0%)
/* * id="pg", Papua New Guinea */
Papua New Guinea: 0 (0%)
/* * id="py", Paraguay */
Paraguay: 1 (0%)
/* * id="pe", Peru */
Peru: 100 (24%)
/* * id="ph", Philippines */
Philippines: 0 (0%)
/* * id="pn", Pitcairn Islands (UK) */
Pitcairn Islands (UK): 0 (0%)
/* * id="pl", Poland */
Poland: 0 (0%)
/* * id="pt", Portugal */
Portugal: 0 (0%)
/* * id="pr", Puerto Rico (US) */
Puerto Rico (US): 1 (0%)
/* * id="qa", Qatar */
Qatar: 0 (0%)
/* * id="ro", Romania */
Romania: 0 (0%)
/* * id="ru", Russia */
Russia: 1 (0%)
/* * id="rw", Rwanda */
Rwanda: 0 (0%)
/* * id="bl", Saint Barthelemy (France) */
Saint Barthelemy (France): 0 (0%)
/* * id="sh", Saint Helena, Ascension and Tristan da Cunha (UK) */
Saint Helena, Ascension and Tristan da Cunha (UK): 0 (0%)
/* * id="kn", Saint Kitts and Nevis */
Saint Kitts and Nevis: 0 (0%)
/* * id="lc", Saint Lucia */
Saint Lucia: 0 (0%)
/* * id="mf", Saint Martin (France) */
Saint Martin (France): 0 (0%)
/* * id="pm", Saint Pierre and Miquelon (France) */
Saint Pierre and Miquelon (France): 0 (0%)
/* * id="vc", Saint Vincent and the Grenadines */
Saint Vincent and the Grenadines: 0 (0%)
/* * id="ws", Samoa */
Samoa: 0 (0%)
/* * id="sm", San Marino */
San Marino: 0 (0%)
/* * id="st", Sao Tome and Principe */
Sao Tome and Principe: 0 (0%)
/* * id="sa", Saudi Arabia */
Saudi Arabia: 2 (0%)
/* * id="sn", Senegal */
Senegal: 0 (0%)
/* * id="rs", Serbia */
Serbia: 41 (26%)
/* * id="sc", Seychelles */
Seychelles: 0 (0%)
/* * id="sl", Sierra Leone */
Sierra Leone: 0 (0%)
/* * id="sg", Singapore */
Singapore: 0 (0%)
/* * id="sk", Slovakia */
Slovakia: 14 (0%)
/* * id="si", Slovenia */
Slovenia: 0 (0%)
/* * id="sb", Solomon Islands */
Solomon Islands: 0 (0%)
/* * id="so", Somalia */
Somalia: 0 (0%)
/* * id="za", South Africa */
South Africa: 29 (0%)
/* * id="ss", South Sudan */
South Sudan: 0 (0%)
/* * id="es", Spain */
Spain: 1 (0%)
/* * id="lk", Sri Lanka */
Sri Lanka: 2 (0%)
/* * id="sd", Sudan */
Sudan: 0 (0%)
/* * id="sr", Suriname */
Suriname: 0 (0%)
/* * id="se", Sweden */
Sweden: 0 (0%)
/* * id="ch", Switzerland */
Switzerland: 432 (0%)
/* * id="sy", Syria */
Syria: 0 (0%)
/* * id="tw", Taiwan */
Taiwan: 0 (0%)
/* * id="tj", Tajikistan */
Tajikistan: 0 (0%)
/* * id="tz", Tanzania */
Tanzania: 0 (0%)
/* * id="th", Thailand */
Thailand: 0 (0%)
/* * id="tl", East Timor */
East Timor: 0 (0%)
/* * id="tg", Togo */
Togo: 0 (0%)
/* * id="to", Tonga */
Tonga: 0 (0%)
/* * id="tt", Trinidad and Tobago */
Trinidad and Tobago: 0 (0%)
/* * id="tn", Tunisia */
Tunisia: 3 (1%)
/* * id="tr", Turkey */
Turkey: 0 (0%)
/* * id="tm", Turkmenistan */
Turkmenistan: 0 (0%)
/* * id="tc", Turks and Caicos Islands (UK) */
Turks and Caicos Islands (UK): 0 (0%)
/* * id="tv", Tuvalu */
Tuvalu: 0 (0%)
/* * id="ug", Uganda */
Uganda: 1 (0%)
/* * id="ua", Ukraine */
Ukraine: 0 (0%)
/* * id="ae", United Arab Emirates */
United Arab Emirates: 0 (0%)
/* * id="gb", United Kingdom */
United Kingdom: 3,395 (0%)
/* * id="us", United States */
United States: 4,208 (0%)
/* * id="uy", Uruguay */
Uruguay: 0 (0%)
/* * id="uz", Uzbekistan */
Uzbekistan: 0 (0%)
/* * id="vu", Vanuatu */
Vanuatu: 0 (0%)
/* * id="ve", Venezuela */
Venezuela: 0 (0%)
/* * id="vn", Vietnam */
Vietnam: 0 (0%)
/* * id="vg", British Virgin Islands (UK) */
British Virgin Islands (UK): 0 (0%)
/* * id="vi", U.S. Virgin Islands (US) */
U.S. Virgin Islands (US): 0 (0%)
/* * id="wf", Wallis and Futuna (France) */
Wallis and Futuna (France): 0 (0%)
/* * id="eh", Western Sahara */
Western Sahara: 0 (0%)
/* * id="ye", Yemen */
Yemen: 0 (0%)
/* * id="zm", Zambia */
Zambia: 0 (0%)
/* * id="zw", Zimbabwe */
Zimbabwe: 0 (0%)
Gray
: unsampled;
White
: <100 specimens;
Yellow
: <25%;
Orange
: <:50%;
Red
: <75%;
Maroon
: <100%;
Black
: 100%
The KAGIANA Project
(since 2006)
Copyright (C) 2017-2021 All rights reserved Ogata Lab. & Osaka Prefecture University
