KAGIANA
The keyholes for viewing gene function & evolution

★ Publications of the KAGIANA project

♦ KAGIANA

• Ogata et al., Plant Cell Physiol, 2009.
   KAGIANA: an excel-based tool for retrieving summary information on Arabidopsis genes.   

♦ CoP

• Ogata et al., Bioinformatics, 2010.
   CoP: a database for characterizing co-expressed gene modules with biological information in plants.   
• Ogata et al., J Wood Sci, 2009.
   A database for poplar gene co-expression analysis for systematic understanding of biological processes, including stress responses.   
• Ogata et al., Plant Biotechnol, 2009.
   A gene co-expression database for understanding biological processes in soybean.   
• Ogata et al., Plant Biotechnol, 2009.
   Practical network approaches and biologic interpretations of co-expression analyses in plants.   
• Aoki et al., Plant Cell Physiol, 2009.
  Approaches for extracting practical information from gene co-expression networks in plant biology.   

♦ ConfeitoGUI

• Ogata et al., PLoS One, 2018.
   ConfeitoGUI: A toolkit for size-sensitive community detection from a correlation network.   
• Ogata & Suzuki, Plant Biotechnol, 2011.
   Plant expressed sequence tags databases: practical uses and the improvement of their searches using network module analysis.   
• Ogata et al., Genome Inform, 2009.
   The prediction of local modular structures in a co-expression network based on gene expression datasets.   

	The KAGIANA Project (since 2006)
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